speCiaL reviews in ornitHoLogy
R, A., B. L. W, N. K, S. B. C. . Genome-scale approaches to resolving incongruence in molecu- lar phylogenies. Nature :–. R, M. N., E. M. T, M. L. H, W. S. M, L. G. C, M. L. K, E. M. S M, C. A. O, T. R, K. C. J, . . e value of avian genomics to the conservation of wildlife. BMC Genomics Sup- plement :S. R, M., M. U, P. N. . A sequencing method based on real-time pyrophosphate. Science :–
S, Q. C., M. P. A. C, E. T. S, O. X. M-
, G. N. A. H, M. J. W, B. D. W-
. . Microsatellite discovery by deep sequencing of
enriched genomic libraries. BioTechniques :–. S, C. J., M. R, O. R, V. M, M. H-
, J. G, S. MG, E. M, L. D.
S. . Gallus GBrowse: A unified genomic database for the chicken. Nucleic Acids Research :D–D. S, J., H. J. . Next-generation DNA sequencing. Nature Biotechnology :–. S, J., G. J. P, N. B. R, X. L, J. P. MC-
, A. M. R, M. D. W, K. Z, R. D. M,
G. M. C. . Accurate multiplex polony sequenc-
ing of an evolved bacterial genome. Science :–. S, M. L., H. G. M, J. A. H, D. M. W, S. M. H, P. R. N, J. M. A, G. J. H. . Microbial diversity in the deep sea and the underexplored “rare biosphere.” Proceedings of the National Academy of Sciences USA :–. S, E. M., A. V, E. C, C. M, L. G,
B, A. K. B, J. H. S, R. A. I,
G. Y, P. T. . Analysing diet of small
herbivores: e efficiency of DNA barcoding coupled with high- throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers in Zoology :. S, S. J., C. A. R. . Sequence determination of a mildly virulent strain (CU-) of Gallid herpesvirus type using
pyrosequencing. Virus Genes :–.
S, M., M. K, U. S, M. H, M. M. . Direct multiplex sequencing (DMPS)—A novel method for targeted high-throughput sequencing of ancient and highly degraded DNA. Genome Research :–. S, D., H. W, B. H, Y. C, N. S,
F. S, M. S. C, P. F. S, M. B.
. Microarray-based multicycle-enrichment of genomic
subsets for targeted next-generation sequencing. Genome Research :–.
B, J. R., W. W. G. . Keeping up with the next generation: Massively parallel sequencing in clinical diag- nostics. Journal of Molecular Diagnostics :–.
T, T. T., M. M, B. O, C. S-
. . Gene expression profiling by massively parallel
sequencing. Genome Research :–. T, A. L., K. V, T. C. N, F. E. M, S. K. H, D. A. W, J. F. S, M. E, J. H. H, M. E. H, G. E. R. . Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science :–. V T, C. P., T. P. L. S, L. K. M, J. F. T-
, R. D. S, C. T. L, C. D. H,
S. M, W. C. W, T. S. S. . SNP
discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods :–. V, R. K., S. N. N, G. D. M, S. A. J.
. Next-generation sequencing technologies and their impli-
cations for crop genetics and breeding. Trends in Biotechnology
V, V., S. B. N, E. H. T, J. S, S. H. H.
. Next generation sequence analysis for mitochondrial dis-
orders. Genome Medicine :. V, J. C., C. W. W, H. W. F, M. J. F, D. L. C, I. H, J. H. M. . Rapid transcriptome characterization for a nonmodel organism using
pyrosequencing. Molecular Ecology :–.
W, A. P., K. L. W, K. C, C. W, J. B. O. . Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiology :–. W, E., M. T. P. G, J. B, S. Y. W. H, P. F. C, A. R, L. P. T, R. R. F, A. S, T. V. K, . . Analysis of complete mito- chondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. BMC Evolutionary Biology :. W, R. W., J. A. K, B. N. B, C. E. O’L, S. M. L, J. J. T, A. M. D, P. B, N. L-
, C. L. T, . . Major his-
tocompatibility complex genotyping with massively parallel pyrosequencing. Nature Medicine :–. Z, D. J., D. M. H. . Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology :–.
Received November , accepted December .